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Department of Plant Sciences


Here are the publications that the Department of Plant Sciences has produced since we started keeping a record in late 2015.  It is probably not a complete list:


Mohammad-Sidik A, Sun J, Shin R, Song Z, Ning Y, Matthus E, Wilkins KA, Davies JM. (2021) Annexin 1 Is a Component of eATP-Induced Cytosolic Calcium Elevation in Arabidopsis thaliana Roots. International Journal of Molecular Sciences.

Frangedakis E, Waller M, Nishiyama T, Tsukaya H, Xu X, Yue Y, Tjahjadi M, Gunadi A, Van Eck J, Li F, Szovenyi P, Sakakibara K. (2021) A simple Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis. bioRxiv.

Liu Q, Ding Y, Shi Y, Ma L, Wang Y, Song C, Wilkins KA, Davies JM, Knight H, Knight MR, Gong Z, Guo Y, Yang S. (2021) The calcium transporter ANNEXIN1 mediates cold‐induced calcium signaling and freezing tolerance in plants. The EMBO Journal.

Singh P, Stevenson SR, Reyna-Llorens I, Reeves G, Schreier TB, Hibberd JM. (2021) Induction of C4 genes evolved through changes in cis allowing integration into ancestral C3 gene regulatory networks. bioRxiv.

Jarratt-Barnham E, Wang L, Ning Y, Davies JM. (2021) The Complex Story of Plant Cyclic Nucleotide-Gated Channels. International Journal of Molecular Sciences.

Urban L, Holzer A, Baronas JJ, Hall, MB Braeuninger-Weimer P, Scherm MJ, Kunz DJ, Perera SN, Martin-Herranz DE, Tipper ET, Salter SJ, Stammnitz MR. (2021) Freshwater monitoring by nanopore sequencing. eLife.

Cuacos M, Lambing C, Pachon-Penalba M, Osman K, Armstrong SJ, Henderson IR, Sanchez-Moran E, Franklin FCH, Heckmann S. (2021) Meiotic chromosome axis remodelling is critical for meiotic recombination in Brassica rapa. Journal of Experimental Botany.

Sacristan S, Goss E, Eves-Van den Akker S. (2021) How do pathogens evolve novel virulence activities? IS-MPMI.

Meyer M, Bacha N, Tesfaye T, Alemayehu T, Abera E, Hundie B, Woldeab G, Girma B, Gemechu A, Negash T, Mideksa T, Smith J, Jaleta M, D. Hodson D, Gilligan CA. (2021) Wheat rust epidemics damage Ethiopian wheat production: A decade of field disease surveillance reveals national-scale trends in past outbreaks. PLOS One.

Kumar A. Yadav G. (2021) Shared ancestry of core-histone subunits and non-histone plant proteins containing the histone fold motif (HFM). Journal of Bioinformatics and Computational Biology.

Mahtha SK, Purama RK, Kumari R, Yadav G. (2021) Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice. Methods in Molecular Biology (Clifton, N.J.).

Gupta R, Prasad A, Babu S. Yadav G. (2021) Temporal Bibliometry Networks of SARS, MERS and COVID19 Reveal Dynamics of the Pandemic. In: Benito R.M., Cherifi C., Cherifi H., Moro E., Rocha L.M., Sales-Pardo M. (eds) Complex Networks & Their Applications IX. COMPLEX NETWORKS 2020 2020. Studies in Computational Intelligence, vol 944. Springer, Cham.

Kim JH, Bell LJ, Wang X, Wimalasekera R, Bastos HP, Kelly KA, Hannah MA, Webb AAR. (2021) Arabidopsis sirtuins and poly(ADP‐ribose) polymerases regulate gene expression in the day but do not affect circadian rhythms. Plant Cell and Environment.

Pignon CP, Leakey ADB, Long SP, Kromdijk J. (2021) Drivers of natural variation in water-use efficiency under fluctuating light are promising targets for improvement in sorghum. Frontiers in Plant Science. 

Ely KS, Rogers A, … Burnett AC, … Kromdijk J, … Yang D. (2021) A reporting format for leaf-level gas exchange data and metadata. Ecological Informatics.

Cuacos M, Lambing C, Pachon-Penalba M, Osman K, Armstrong SJ, Henderson IR, Sanchez-Moran E, Franklin FCH, Heckmann S. (2021) Meiotic chromosome axis remodelling is critical for meiotic recombination in Brassica rapa. Journal of Experimental Botany.

de Melo JRF, Gutsch A, De Caluwé T, Leloup J, Gonze D, Hermans C, Webb AAR, Verbruggen N. (2021) Magnesium maintains the length of the circadian period in Arabidopsis. Plant Physiology.

McGaley J, Paszkowski U. (2021) Visualising an invisible symbiosis. Plants, People, Planet.

Malabarba J, Meents AK, Reichelt M, Scholz SS, Peiter E, Rachowka J, Konopka-Postupolska D, Wilkins KA, Davies JM, Oelmüller R, Mithöfer A. (2021) ANNEXIN1 mediates calcium‐dependent systemic defense in Arabidopsis plants upon herbivory and wounding. New Phytologist.

Kranse O, Beasley H, Adams S, Pires-daSilva A, Bell C, Lilley CJ, Urwin PE, Bird D, Miska E, Smant G, Gheysen G, Jones J, Viney M, Abad P, Maier TR, Baum TJ, Siddique S, Williamson V, Akay A, Eves-van den Akker S. (2021) Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. Genes Genomes Genetics

Cai H, Liu L, Zhang M, Chai M, Huang Y, Chen F, Yan M, Su Z, Henderson I, Palanivelu R, Chen X, Qin Y. (2021) Spatiotemporal control of miR398 biogenesis via chromatin remodeling and kinase signaling ensures proper ovule development. The Plant Cell.

Meudt HM, Albach DC, Tanentzap AJ, Igea J, Newmarch SC, Brandt AJ, Lee WG, Tate JA. (2021) Polyploidy on Islands: Its Emergence and Importance for Diversification. Frontiers in Plant Sciences.

Nunes MH, Jucker T, Riutta R, Svátek M, Kvasnica J, Rejžek M, Matula R, Majalap N, Ewers RM, Swinfield T, Valbuena R, Vaughn NR, Asner GP, Coomes DA. (2021) Recovery of logged forest fragments in a human-modified tropical landscape during the 2015-16 El Niño. Nature Communications. 

Pellegrini AFA, Hein AM, Cavender-Bares J, Montgomery RA, Staver AC, Silla F, Hobbie SE, Reich PB. (2021) Disease and fire interact to influence transitions between savanna–forest ecosystems over a multi‐decadal experiment. Ecology Letters.

Pellegrini AFA, et al. )2021) Decadal changes in fire frequencies shift tree communities and functional traits. Nature Ecology & Evolution. 

Raiol LL Jnr, Cifuentes-Arenas JC, NJ, Turgeon R, Lopes S. (2021) Modelling ‘Candidatus Liberibacter asiaticus’ movement within citrus plants. Phytopathology. 

Burnett AC, Serbin SP, Rogers A. (2021) Source:sink imbalance detected with leaf and canopy‐level spectroscopy in a field‐grown crop. Plant Cell and Environment. 

Eves-van den Akker S. (2021) Plant–nematode interactions. Current Opinion in Plant Biology. 

Wilson B, Dolotbakov A, Burgess BJ, Clubbe C, Lazkov G, Shalpykov K, Ganybaeva M, Sultangaziev O, Brockington SF. (2021) Central Asian wild tulip conservation requires a regional approach, especially in the face of climate change. Biodiversity and Conservation.

Fradgley NS, Bentley AR, Swarbreck SM. (2021) Defining the physiological determinants of low nitrogen requirement in wheat. Biochem Soc Trans. 

Suprunenko YF, Cornell SJ, Gilligan CA. (2021) Analytical approximation for invasion and endemic thresholds, and the optimal control of epidemics in spatially explicit individual-based models. Journal of the Royal Society Interface.


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