Single-cell data browsers

Welcome to the interactive single-cell data repository for the University of Cambridge Department of Plant Sciences.

This platform is designed to provide scientists, collaborators, and the broader plant biology community with open-access tools to explore single-cell transcriptomic datasets generated here in Cambridge.

Without needing advanced command-line expertise, you can use our integrated data browsers to map cell clusters, search for gene expression patterns across specific cell types, and download processed data matrices for your own comparative studies.

Available browsers

scRNAseq Explorer of Root Cell-Type Nitrogen Response Programs

Patron Lab

Single-cell RNA-seq, bulk RNA-seq and proteomics of root cell-type nitrogen responses in Arabidopsis and tomato.

Accompanies Evolutionary Rewiring of Root Cell-Type Nitrogen Responses

Open scRNAseq Explorer

Browsers hosted elsewhere

Published by research groups in the department and hosted outside the University. We cannot answer for their availability or accessibility, and each opens on another website.