LOCUS pGR106\new 11107 bp DNA circular 5-JUN-2006 SOURCE ORGANISM COMMENT re-sequenced January 2004 based on pGREEN0000 infectious PVX clone for Virus Induced Gene Silencing COMMENT This file is created by Vector NTI http://www.informaxinc.com/ COMMENT VNTDATE|330791198| COMMENT VNTDBDATE|412442631| COMMENT LSOWNER| COMMENT VNTNAME|pGR106 new| COMMENT VNTAUTHORNAME|Louise Chappell| COMMENT Vector_NTI_Display_Data_(Do_Not_Edit!) 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Location/Qualifiers misc_feature 2149..6519 /vntifkey="21" /label=Replicase misc_feature 6550..7230 /vntifkey="21" /label=25K /note="Silencing suppressor & movement protein" misc_feature 7211..7558 /vntifkey="21" /label=12K misc_feature 7491..7703 /vntifkey="21" /label=8K misc_feature 7803..8516 /vntifkey="21" /label=CP /note="Coat protein" misc_feature 7704..7731 /vntifkey="21" /label=CP\prom misc_feature 7793..7820 /vntifkey="21" /label=CP\prom promoter 1629..2064 /vntifkey="29" /label=35S\Prom terminator 8601..8880 /vntifkey="43" /label=Nos\Term misc_feature 7732..7764 /vntifkey="21" /label=MCS polyA_signal 8577..8600 /vntifkey="25" /label=Poly\A /note="Short poly A tail" misc_feature complement(31..846) /vntifkey="21" /label=NptI /note="Kanamycin resistance gene" misc_feature complement(9528..10017) /vntifkey="21" /label=pSa\(in\rev\orientation) /note="Origin of replication" misc_feature 1596..1596 /vntifkey="21" /label=Inversion\point misc_feature 9516..9516 /vntifkey="21" /label=Inversion\point insertion_seq 10269..11044 /vntifkey="14" /label=New\insertion /note="insertion found when re-sequencing wrt old pGR106 sequence, best BLAST hit is IS1 repeat region, possibly encoding InsB gene (E.coli)" misc_feature 9635..9635 /vntifkey="21" /label=6bp\deletion /note="relative to old pGR106 sequence (AGCGCC)" misc_feature 11045..11045 /vntifkey="21" /label=Inversion\point misc_feature 10043..10043 /vntifkey="21" /label=Inversion\point BASE COUNT 3164 a 2638 c 2643 g 2662 t ORIGIN 1 gcttacataa acagtaatac aaggggtgtt atgagccata ttcaacggga aacgtcttgc 61 tcaaggccgc gattaaattc caacatggat gctgatttat atgggtataa atgggctcgc 121 gataatgtcg ggcaatcagg tgcgacaatc taccgattgt atgggaagcc cgatgcgcca 181 gagttgtttc tgaaacatgg caaaggtagc gttgccaatg atgttacaga tgagatggtc 241 agactaaact ggctgacgga atttatgcct cttccgacca tcaagcattt tatccgtact 301 cctgatgatg catggttact caccactgcg atcccaggga aaacagcatt ccaggtatta 361 gaagaatatc ctgattcagg tgaaaatatt gttgatgcgc tggcagtgtt cctgcgccgg 421 ttgcattcga ttcctgtttg taattgtcct tttaacagcg atcgcgtatt tcgtctcgct 481 caggcgcaat cacgaatgaa taacggtttg gttgatgcga gtgattttga tgacgagcgt 541 aatggctggc ctgttgaaca agtctggaaa gaaatgcata aacttttgcc attctcaccg 601 gattcagtcg tcactcatgg tgatttctca cttgataacc ttatttttga cgaggggaaa 661 ttaataggtt gtattgatgt tggacgagtc ggaatcgcag accgatacca ggatcttgcc 721 atcctatgga actgcctcgg tgagttttct ccttcattac agaaacggct ttttcaaaaa 781 tatggtattg ataatcctga tatgaataaa ttgcagtttc atttgatgct cgatgagttt 841 ttctaatcag aattggttaa ttggttgtaa ccatgaccaa aatcccttaa cgtgagtttt 901 cgttccactg agcgtcagac cccgtagaaa agatcaaagg atcttcttga gatccttttt 961 ttctgcgcgt aatctgctgc ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt 1021 tgccggatca agagctacca actctttttc cgaaggtaac tggcttcagc agagcgcaga 1081 taccaaatac tgttcttcta gtgtagccgt agttaggcca ccacttcaag aactctgtag 1141 caccgcctac atacctcgct ctgctaatcc tgttaccagt ggctgctgcc agtggcgata 1201 agtcgtgtct taccgggttg gactcaagac gatagttacc ggataaggcg cagcggtcgg 1261 gctgaacggg gggttcgtgc acacagccca gcttggagcg aacgacctac accgaactga 1321 gatacctaca gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca 1381 ggtatccggt aagcggcagg gtcggaacag gagagcgcac gagggagctt ccagggggaa 1441 acgcctggta tctttatagt cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt 1501 tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc cagcaacgcg gcctttttac 1561 ggttcctggc cttttgctgg ccttttgctc acatgagatc ttggcaggat atattgtggt 1621 gtaacgttct cgcatgcctg caggtcaaca tggtggagca cgacacactt gtctactcca 1681 aaaatatcaa agatacagtc tcagaagacc aaagggcaat tgagactttt caacaaaggg 1741 taatatccgg aaacctcctc ggattccatt gcccagctat ctgtcacttt attgtgaaga 1801 tagtggaaaa ggaaggtggc tcctacaaat gccatcattg cgataaagga aaggccatcg 1861 ttgaagatgc ctctgccgac agtggtccca aagatggacc cccacccacg aggagcatcg 1921 tggaaaaaga agacgttcca accacgtctt caaagcaagt ggattgatgt gatatctcca 1981 ctgacgtaag ggatgacgca caatcccact atccttcgca agacccttcc tctatataag 2041 gaagttcatt tcatttggag aggagaaaac taaaccatac accaccaaca caaccaaacc 2101 caccacgccc aattgttaca cacccgcttg aaaaagaaag tttaacaaat ggccaaggtg 2161 cgcgaggttt accaatcttt tacagactcc accacaaaaa ctctcatcca agatgaggct 2221 tatagaaaca ttcgccccat catggaaaaa cacaaactag ctaaccctta cgctcaaacg 2281 gttgaagcgg ctaatgatct agaggggttc ggcatagcca ccaatcccta tagcattgaa 2341 ttgcatacac atgcagccgc taagaccata gagaataaac ttctagaggt gcttggttcc 2401 atcctaccac aagaacctgt tacatttatg tttcttaaac ccagaaagct aaactacatg 2461 agaagaaacc cgcggatcaa ggacattttc caaaatgttg ccattgaacc aagagacgta 2521 gccaggtacc ccaaggaaac aataattgac aaactcacag agatcacaac ggaaacagca 2581 tacattagtg acactctgca cttcttggat ccgagctaca tagtggagac attccaaaac 2641 tgcccaaaat tgcaaacatt gtatgcgacc ttagttctcc ccgttgaggc agcctttaaa 2701 atggaaagca ctcacccgaa catatacagc ctcaaatact tcggagatgg tttccagtat 2761 ataccaggca accatggtgg cggggcatac catcatgaat tcgctcatct acaatggctc 2821 aaagtgggaa agatcaagtg gagggacccc aaggatagct ttctcggaca tctcaattac 2881 acgactgagc aggttgagat gcacacagtg acagtacagt tgcaggaatc gttcgcggca 2941 aaccacttgt actgcatcag gagaggagac ttgctcacac cggaggtgcg cactttcggc 3001 caacctgaca ggtacgtgat tccaccacag atcttcctcc caaaagttca caactgcaag 3061 aagccgattc tcaagaaaac tatgatgcag ctcttcttgt atgttaggac agtcaaggtc 3121 gcaaaaaatt gtgacatttt tgccaaagtc agacaattaa ttaaatcatc tgacttggac 3181 aaatactctg ctgtggaact ggtttactta gtaagctaca tggagttcct tgccgattta 3241 caagctacca cctgcttctc agacacactt tctggtggct tgctaacaaa gacccttgca 3301 ccggtgaggg cttggataca agagaaaaag atgcagctgt ttggtcttga ggactacgcg 3361 aagttagtca aagcagttga tttccacccg gtggattttt ctttcaaagt ggaaacttgg 3421 gacttcagat tccacccctt gcaagcgtgg aaagccttcc gaccaaggga agtgtcggat 3481 gtagaggaaa tggaaagttt gttctcagat ggggacttgc ttgattgctt cacaagaatg 3541 ccagcttatg cggtaaacgc agaggaagat ttagctgcaa tcaggaaaac gcccgagatg 3601 gatgtcggtc aagaagttaa agaacctgca ggagacagaa atcaatactc aaaccctgca 3661 gaaactttcc tcaacaagct ccacaggaaa cacagtaggg aggtgaaaca ccaggccgca 3721 aagaaagcta aacgcctagc tgaaatccag gagtcaatga gagctgaagg tgatgccgaa 3781 ccaaatgaaa taagcggggg catgggggca atacccagca acgccgaact tcctggcacg 3841 aatgatgcca gacaagaact cacactccca accactaaac ctgtccctgc aaggtgggaa 3901 gatgcttcat tcacagattc tagtgtggaa gaggagcagg ttaaacccct tggaaaagaa 3961 accgttgaaa cagcgacgca acaagtcatc gaaggacttc cttggaaaca ctggattcct 4021 caattaaatg ctgttggatt caaggcgctg gaaattcaga gggataggag tggaacaatg 4081 atcatgccca tcacagaaat ggtctccggg ctggaaaaag aggacttccc tgaaggaact 4141 ccaaaagagt tggcacgaga attgttcgct atgaacagaa gccctgccac catccctttg 4201 gacctgctta gagccagaga ctacggcagt gatgtaaaga acaagagaat tggtgccatc 4261 acaaagacac aggcaacgag ttggggcgaa tacttgacag gaaagataga aagcttgact 4321 gagaggaaag ttgcgacttg tgtcattcat ggagctggag gttctggaaa aagtcatgcc 4381 atccagaagg cattgagaga aattggcaag ggctcggaca tcactgtagt cctgccgacc 4441 aatgaactgc ggctagattg gagtaagaaa gtgcctaaca ctgagcccta tatgttcaag 4501 acctatgaaa aggcgttaat tgggggaaca ggcagcatag tcatctttga cgattactca 4561 aaacttcctc ccggttacat agaagcctta gtctgtttct actctaaaat caagctaatc 4621 attctaacag gagatagcag acaaagcgtc taccatgaaa ctgctgagga cgcctccatc 4681 aggcatttgg gaccagcaac agagtacttc tcaaaatact gccgatacta tctcaatgcc 4741 acacaccgca acaagaaaga tcttgcgaac atgcttggtg tctacagtga gagaacggga 4801 gtcaccgaaa tcagcatgag cgccgagttc ttagaaggaa tcccaacttt ggtaccctcg 4861 gatgagaaga gaaagctgta catgggcacc gggaggaatg acacgttcac atacgctgga 4921 tgccaggggc taactaagcc gaaggtacaa atagtgttgg accacaacac ccaagtgtgt 4981 agcgcgaatg tgatgtacac ggcactttct agagccaccg ataggattca cttcgtgaac 5041 acaagtgcaa attcctcggc cttctgggaa aagttggaca gcacccctta cctcaagact 5101 ttcctatcag tggtgagaga acaagcactc agggagtacg agccggcaga ggcagagcca 5161 attcaagagc ctgagcccca gacacacatg tgtgtcgaga atgaggagtc cgtgctagaa 5221 gagtacaaag aggaactctt ggaaaagttt gacagagaga tccactctga atcccatggt 5281 cattcaaact gtgtccaaac tgaagacaca accattcagt tgttttcgca tcaacaagca 5341 aaagatgaga ccctcctctg ggcgactata gatgcgcggc tcaagaccag caatcaagag 5401 acaaacttcc gagaattcct gagcaagaag gacattgggg acgttctgtt tttaaactac 5461 caaaaagcta tgggtttacc caaagagcgt attccttttt cccaagaggt ctgggaagct 5521 tgtgcccacg aagtacaaag caagtacctc agcaagtcaa agtgcaactt gatcaatggg 5581 actgtgagac agagcccaga cttcgatgaa aataagatta tggtattcct caagtcgcag 5641 tgggtcacaa aggtggaaaa actaggtcta cccaagatta agccaggtca aaccatagca 5701 gccttttacc agcagactgt gatgcttttt ggaactatgg ctaggtacat gcgatggttc 5761 agacaggctt tccagccaaa agaagtcttc ataaactgtg agaccacgcc agatgacatg 5821 tctgcatggg ccttgaacaa ctggaatttc agcagaccta gcttggctaa tgactacaca 5881 gctttcgacc agtctcagga tggagccatg ttgcaatttg aggtgctcaa agccaaacac 5941 cactgcatac cagaggaaat cattcaggca tacatagata ttaagactaa tgcacagatt 6001 ttcctaggca cgttatcaat tatgcgcctg actggtgaag gtcccacttt tgatgcaaac 6061 actgagtgca acatagctta cacccataca aagtttgaca tcccagccgg aactgctcaa 6121 gtttatgcag gagacgactc cgcactggac tgtgttccag aagtgaagca tagtttccac 6181 aggcttgagg acaaattact cctaaagtca aagcctgtaa tcacgcagca aaagaagggc 6241 agttggcctg agttttgtgg ttggctgatc acaccaaaag gggtgatgaa agacccaatt 6301 aagctccatg ttagcttaaa attggctgaa gctaagggtg aactcaagaa atgtcaagat 6361 tcctatgaaa ttgatctgag ttatgcctat gaccacaagg actctctgca tgacttgttc 6421 gatgagaaac agtgtcaggc acacacactc acttgcagaa cactaatcaa gtcagggaga 6481 ggcactgtct cactttcccg cctcagaaac tttctttaac cgttaagtta ccttagagat 6541 ttgaataaga tggatattct catcagtagt ttgaaaagtt taggttattc taggacttcc 6601 aaatctttag attcaggacc tttggtagta catgcagtag ccggagccgg taagtccaca 6661 gccctaagga agttgatcct cagacaccca acattcaccg tgcatacact cggtgtccct 6721 gacaaggtga gtatcagaac tagaggcata cagaagccag gacctattcc tgagggcaac 6781 ttcgcaatcc tcgatgagta tactttggac aacaccacaa ggaactcata ccaggcactt 6841 tttgctgacc cttatcaggc accggagttt agcctagagc cccacttcta cttggaaaca 6901 tcatttcgag ttccgaggaa agtggcagat ttgatagctg gctgtggctt cgatttcgag 6961 accaactcac cggaagaagg gcacttagag atcactggca tattcaaagg gcccctactc 7021 ggaaaggtga tagccattga tgaggagtct gagacaacac tgtccaggca tggtgttgag 7081 tttgttaagc cctgccaagt gacgggactt gagttcaaag tagtcactat tgtgtctgcc 7141 gcaccaatag aggaaattgg ccagtccaca gctttctaca acgctatcac caggtcaaag 7201 ggattgacat atgtccgcgc agggccatag gctgaccgct ccggtcaatt ctgaaaaagt 7261 gtacatagta ttaggtctat catttgcttt agtttcaatt acctttctgc tttctagaaa 7321 tagcttaccc cacgtcggtg acaacattca cagcttgcca cacggaggag cttacagaga 7381 cggcaccaaa gcaatcttgt acaactcccc aaatctaggg tcacgagtga gtctacacaa 7441 cggaaagaac gcagcatttg ctgccgtttt gctactgact ttgctgatct atggaagtaa 7501 atacatatct caacgcaatc atacttgtgc ttgtggtaac aatcatagca gtcattagca 7561 cttccttagt gaggactgaa ccttgtgtca tcaagattac tggggaatca atcacagtgt 7621 tggcttgcaa actagatgca gaaaccataa gggccattgc cgatctcaag ccactctccg 7681 ttgaacggtt aagtttccat tgatactcga aagaggtcag caccagctag catcgattgg 7741 cgcgcctgga gcggccgcgt cgaccgccga tgaacggtta agtttccatt gatactcgaa 7801 agatgtcagc accagctagc acaacacagc ccatagggtc aactacctca actaccacaa 7861 aaactgcagg cgcaactcct gccacagctt caggcctgtt cactatcccg gatggggatt 7921 tctttagtac agcccgtgcc atagtagcca gcaatgctgt cgcaacaaat gaggacctca 7981 gcaagattga ggctatttgg aaggacatga aggtgcccac agacactatg gcacaggctg 8041 cttgggactt agtcagacac tgtgctgatg taggatcatc cgctcaaaca gaaatgatag 8101 atacaggtcc ctattccaac ggcatcagca gagctagact ggcagcagca attaaagagg 8161 tgtgcacact taggcaattt tgcatgaagt atgccccagt ggtatggaac tggatgttaa 8221 ctaacaacag tccacctgct aactggcaag cacaaggttt caagcctgag cacaaattcg 8281 ctgcattcga cttcttcaat ggagtcacca acccagctgc catcatgccc aaagaggggc 8341 tcatccggcc accgtctgaa gctgaaatga atgctgccca aactgctgcc tttgtgaaga 8401 ttacaaaggc cagggcacaa tccaacgact ttgccagcct agatgcagct gtcactcgag 8461 gtcgtatcac tggaacaaca accgctgagg ctgttgtcac tctaccacca ccataactac 8521 gtctacataa ccgacgccta ccccagtttc atagtatttt ctggtttgat tgtatgaata 8581 atataaataa aaaaaaaaaa ctagtgggta ccgcgaattt ccccgatcgt tcaaacattt 8641 ggcaataaag tttcttaaga ttgaatcctg ttgccggtct tgcgatgatt atcatataat 8701 ttctgttgaa ttacgttaag catgtaataa ttaacatgta atgcatgacg ttatttatga 8761 gatgggtttt tatgattaga gtcccgcaat tatacattta atacgcgata gaaaacaaaa 8821 tatagcgcgc aaactaggat aaattatcgc gcgcggtgtc atctatgtta ctagatcggg 8881 aattcactgg ccgtcgtttt acaacgtcgt gactgggaaa accctggcgt tacccaactt 8941 aatcgccttg cagcacatcc ccctttcgcc agctggcgta atagcgaaga ggcccgcacc 9001 gatcgccctt cccaacagtt gcgcagcctg aatggcgaat ggcgcctgat gagctccagc 9061 ttttgttccc tttagtgagg gttaattgcg cgcttggcgt aatcatggtc atagctgttt 9121 cctgtgtgaa attgttatcc gctcacaatt ccacacaaca tacgagccgg aagcataaag 9181 tgtaaagcct ggggtgccta atgagtgagc taactcacat taattgcgtt gcgctcactg 9241 cccgctttcc agtcgggaaa cctgtcgtgc cagctgcatt aatgaatcgg ccaacgcgcg 9301 gggagaggcg gtttgcgtat tgggcgctct tccgcttcct cgctcactga ctcgctgcgc 9361 tcggtcgttc ggctgcggcg agcggtatca gctcactcaa aggcggtaat acggttatcc 9421 acagaatcag gggataacgc aggaaagaac atgaaggcct tgacaggata tattggcggg 9481 taaactaagt cgctgtatgt gtttgtttga gatctaattc cggggatcgg aaatccagaa 9541 gcccgagagg ttgccgcctt tcgggctttt tctttttcaa aaaaaaaaat ttataaaacg 9601 atctgttgcg gccggccgcc gggttgtggg caaaggcgct cgacggtggg caaccgcttg 9661 cggttgtcca cgggcggagc cggtgcgcgt agcgcattgt ccacaagcca agggcgacca 9721 ataattgata tatatattca taattgaaaa gctaattgaa catactactt gctgtaacta 9781 cttgccggag cgaggggtgt ttgcaagctg ttgatctgaa agggctatta gcgttctcac 9841 gtgccttttt gattagcgat ttcacgtgac cttattagcg atttcacgta ctccgattag 9901 cgatttcacg taccctgatt agcgatttca cgtggatagt ttttggagcg ggccggaaag 9961 ccccgtgaat caaggctttg cggggcatta gcggtttcac gtggataact accctctatc 10021 cacaggcttc cggggataaa aaagcccgct cgacggcggg ctgttggatg gggatcgcct 10081 gaatcgcccc atcatccagc cagaaagtga gggagccacg gttgatgaga gctttgttgt 10141 aggtggacca gttggtgatt ttgaactttt gctttgccac ggaacggtct gcgttgtcgg 10201 gaagatgcgt gatctgatcc ttcaactcag caaaagttcg atttattcaa caaagccacg 10261 ttgtgtctca aaatctggta atgactccaa cttattgata gtgttttatg ttcagataat 10321 gcccgatgac tttgtcatgc agctccaccg attttgagaa cgacagcgac ttccgtccca 10381 gccgtgccag gtgctgcctc agattcaggt tatgccgctc aattcgctgc gtatatcgct 10441 tgctgattac gtgcagcttt cccttcaggc gggattcata cagcggccag ccatccgtca 10501 tccatatcac cacgtcaaag ggtgacagca ggctcataag acgccccagc gtcgccatag 10561 tgcgttcacc gaatacgtgc gcaacaaccg tcttccggag actgtcatac gcgtaaaaca 10621 gccagcgctg gcgcgattta gccccgacat agccccactg ttcgtccatt tccgcgcaga 10681 cgatgacgtc actgcccggc tgtatgcgcg aggttaccga ctgcggcctg agttttttaa 10741 gtgacgtaaa atcgtgttga ggccaacgcc cataatgcgg gctgttgccc ggcatccaac 10801 gccattcatg gccatatcaa tgattttctg gtgcgtaccg ggttgagaag cggtgtaagt 10861 gaactgcagt tgccatgttt tacggcagtg agagcagaga tagcgctgat gtccggcggt 10921 gcttttgccg ttacgcacca ccccgtcagt agctgaacag gagggacagc tgatagaaac 10981 agaagccact ggagcacctc aaaaacacca tcatacacta aatcagtaag ttggcagcat 11041 cacccaaaat ctctgatgtt acattgcaca agataaaaat atatcatcat gaacaataaa 11101 actgtct //