Laboratory Publications
[Click title to download PDF]

Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation.
Parizot B, Laplaze L, Ricaud L, Boucheron-Dubuisson E, Bayle V, Bonke M, De Smet I, Poethig SR, Helariutta Y, Haseloff J, Chriqui D, Beeckman T, Nussaume L. Plant Physiol. 1:140-148 (2008).

A system for modelling cell cell Interactions during plant morphogenesis.
Dupuy L, Mackenzie J, Rudge T, Haseloff J. (2007) Annals of Botany in press: E-pub Nov 2007 doi:10.1093/aob/mcm235.

New tools for self-organised pattern formation.
K. Bernhardt, E.J. Carter, N.S. Chand, J. Lee, Y. Xu, X. Zhu, J.W. Ajioka, J.M. Goncalves, J. Haseloff, G. Micklem, and D. Rowe IET Synthetic Biology 1:29-31 (2007).

Time of day modulates low temperature Ca++ signals in Arabidopsis.
Dodd AN, Jakobsen MK, Baker AJ, Telzerow A, Hou SW,Laplaze L, Barrot L, Poethig RS, Haseloff J, Webb AA. Plant Journal 48:962-973 (2006).

A biomechanical model for the study of plant morphogenesis: Coleochaete orbicularis.
Dupuy, L., Mackenzie, J., Haseloff, J. Proceedings of the 5th Plant Biomechanics Conference. (2006)

A map of KNAT gene expression in the Arabidopsis root.
Truernit, E., Siemering, K.S., Hodge, S. Grbic, V. and Haseloff, J. Plant Molecular Biology 60:1-20 (2006).

Armadillo-related proteins promote lateral root development in Arabidopsis.
Coates, J.C., Laplaze, L. and Haseloff, J. PNAS 103:1621-1626 (2006).

Imaging Plant Cells.
Moreno, N., Bougourd, S., Haseloff, J. and Feijo, J.A. Handbook of Confocal Microscopy, Ed. J.B. Pawley, Springer Science, (2006).

Root gravitropism requires the intercellular transmission of an auxin signal.
Swarup, R., Kramer, E.M., Perry, P., Knox, K., Leyser , H.M.O., Haseloff, J, Beemster, G., Bhalerao, R. and Bennett, M.J. Nature Cell Biology 7:1056-1065 (2005).

A computational model of cellular morphogenesis in plants.
Rudge, T. and Haseloff, J. Lecture Notes in Computer Science: Advances in Artificial Life, 3630:78-87 (2005).

GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana.
Laplaze L, Parizot B, Baker A, Ricaud L, Martiniere A, Auguy F, Franche C, Nussaume L, Bogusz D and Haseloff J. Journal Exp Bot. 56:2433-42. (2005).

Marking cell lineages in living tissues.
Kurup S, Runions J, Kohler U, Laplaze L, Hodge S and Haseloff J. Plant Journal 42: 444-453 (2005).

Polycomb genes control developmental timing of endosperm.
Ingouff M, Haseloff J & Berger F, Plant Journal 42:663-674 (2005).

Spatial control of transgene expression in rice (Oryza sativa L.) using the GAL4 enhancer trapping system.
Johnson AA, Hibberd JM, Gay C, Essah PA, Haseloff J, Tester M, Guiderdoni E., Plant Journal 41:779-789 (2005).

Modified HAP1 for plant gene expression.
Haseloff J, Bauch M, Boisnard-Lorig C, Hodge S, Laplaze L, Runions J & Kurup S. US Patent 2005/0132432. (2005).

Old botanical techniques for new microscopes.
Jim Haseloff. Biotechniques 34: 1174-1182 (2003).

cg12 expression is specifically linked to infection of root hairs and cortical cells during Casuarina glauca and Allocasuarina verticillata actinorhizal nodule development.
Svistoonoff S, Laplaze L, Auguy F, Runions J, Duponnois R, Haseloff J, Franche C, Bogusz D., Mol Plant Microbe Interact. 16:600-7 (2003).

Optimisation of trans-splicing riboyme efficiency and specificity by in vivo genetic selection.
Ayre, B.G. Kohler, U., Turgeon, R. and Haseloff, J. Nuc. Acids Res. 30:1-9 (2002).

Targeted gene expression in plants using GAL4.
Haseloff, J. and Hodge, S. US Patent 6,255,558 (2001).

Dynamic analyses of the expression of the histone::yfp fusion protein in Arabidopsis show that syncytial endosperm is divided into mitotic domains.
Boisnard-Lorig, C., Colon-Carmona, A., Bauch, M.., Hodge, S., Doerner, P., Bancharel, E., Dumas, C., Haseloff, J. and Berger, F. Plant Cell 13: 495-509 (2001).  

Promiscuous and specific phospholipid binding by domains in ZAC, a membrane associated Arabidopsis protein with an ARF GAP zinc finger and a C2 domain.
Jensen, R.B., Lykke-Andersen, K., Frandsen, G.I., Nielsen, H.B., Haseloff, J., Jespersen, H.M. and Shriver, K.
Plant Mol. Biol. 44: 799-814 (2000).

An aniline blue staining procedure for confocal microscopy and 3D imaging of normal and perturbed cellular phenotypes in mature Arabidopsis embryos.
Bougourd, S., Marrison, J. and Haseloff, J. Plant Journal, 24, 543-550 (2000).

Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root.
Kiegle E, Moore CA, Haseloff J, Tester MA, Knight MR. Plant Journal, 23, 267-78 (2000).

Hyperpolarisation-activated calcium currents found only in cells from the elongation zone of Arabidopsis thaliana roots.
Kiegle, E., Gilliham, M., Haseloff, J and Tester, M. Plant Journal, 21, 225-229 (2000).

Live imaging with green fluorescent protein.
Haseloff, J.; Dormand, E.-L. and Brand, A. H. Methods in Molecular Biology, Vol. 122: Confocal Microscopy Methods and Protocols. Paddock, S. Ed. Humana Press. (1999).

GFP variants for multispectral imaging of living cells.
Jim Haseloff in Methods in Cell Biology, Vol. 58. Editors: Kevin Sullivan & Steve Kay. (1999).

Design of highly specific cytotoxins by using trans-splicing ribozymes.
Ayre, B.G., Köhler, U., Goodman, H.M. and Haseloff, J. Proc. Natl. Acad. Sci. USA. 96, 3507-3512 (1999).

Trans-splicing ribozymes for targeted gene delivery.
Kohler, U. Ayre, B., Goodman, H. M. and Haseloff, J., J. Mol. Biol. 284, 1935-1950 (1999).

Imaging green fluorescent protein in transgenic plants.
Haseloff, J. in Imaging Living Cells, R. Rizzuto and C. Fasolato Eds. Springer-Verlag. (1998).

Miranda mediates asymmetric protein and RNA localisation in the developing nervous system.
Schuldt, A..J., Adams, J.H.J., Davidson, C.M., Micklem, D.R., Haseloff, J., St.Johnston, D. and Brand, A. Genes & Development 12, 1847-1857 (1998).

The uses of GFP in plants.
Jim Haseloff and Kirby Siemering in "The uses of GFP in plants", in Green Fluorescent Protein: Properties, Applications and Protocols. Chalfie, M. and Kain, S. Eds. John Wiley. (1998).

Stomatal patterning on the hypocotyl of Arabidopsis thaliana is controlled by genes involved in the control of root epidermis patterning.
Berger, F., Linstead, P., Dolan, L. and Haseloff, J., Developmental Biology 194, 226-234 (1998).

Positional information in root epidermis is defined during embryogenesis and acts in domains with strict boundaries.
Berger, F., Haseloff, J., Schiefelbein, J. and Dolan, L. , Current Biology 8, 421-430 (1998).

Following cell fate in the living mouse embryo.
M. Zernicka-Goertz, J. Pines, S. McLean Hunter, J.P.C. Dixon, K.R. Siemering, J. Haseloff & M.J. Evans. Development 124:1133-1137 (1997).

An indelible lineage marker for Xenopus using a mutated green fluorescent protein.
M. Zernicka-Goertz, J. Pines, K. Ryan, K.R. Siemering, J. Haseloff, M.J. Evans and J.B. Gurdon, Development 122:3719-3724 (1996).

Mutations that suppress the thermosensitivity of green fluorescent protein.
Kirby R. Siemering, Ralph Golbik, Richard Sever and Jim Haseloff, Current Biology 6:1653-1663 (1996).

Jellyfish green fluorescent protein (GFP) expression in plants.
Haseloff, J., Hodge, S., Prasher, D.C. and Siemering, K.R. WO 96/27675 (1996).

Removal of a cryptic intron and subcellular localisation of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly.
Jim Haseloff*, Kirby R. Siemering, Douglas Prasher and Sarah Hodge, Proc. Natl. Acad. Sci. (USA) 94:2122-2127 (1997).

GFP in plants.
Jim Haseloff and Brad Amos, Trends in Genetics 8:328-329 (1995).

Cell ablation using trans-splicing ribozymes.
Haseloff, J., Brand, A., Perrimon, N. and Goodman, H.M., US Patents 5,849,548; 5,863,774; 5,866,384; 5,882,907; 6,010,904 and 6,071,730 (1992-2000).

Trans-splicing ribozymes.
Haseloff, J. and Goodman, H.M., US Patents 5,874,414 and 6,015,794 (1992-2000).

The HOW AND WHY Wonder Book of Trans-splicing Ribozymes.
Haseloff, J., Brand, A., Perrimon, N. and Goodman, H.M. Poster, Gordon Conference (1992).

Ribozymes:hammerhead ribozymes for targeted cleavage of RNAs.
Haseloff, J., Gerlach, W.L., Jennings, P. and Cameron, F.H. US Patents 4,024,695; 5,254,678; 5,494,814; 5,543,508; 5,543,508; 5,574,143; 5,589,580; 5,707,835; 5,747,335; 5,766,942; 5,840,874 and 6,127,114 (1989-2000).

Molecular characterisation of recombinant green fluorescent protein by fluorescence correlation microscopy.
Terry, B.R.; Matthews, E.K. and Haseloff, J. BBRC 217, 21-27 (1995).

Evolution and replication of tobacco ringspot virus satellite RNA mutants.
Robaglia, C., Bruening, G., Haseloff, J. and Gerlach, W.L. EMBO J. 12, 2969 (1993).

Structure, self-cleavage, and replication of two viroid-like satellite RNAs (virusoids) of subterranean clover mottle virus.
Davies, C., Haseloff, J. and Symons, R.H. Virology 177, 216 (1990).

Sequences required for self-catalysed cleavage of the satellite RNA of tobacco ringspot virus.
Haseloff, J. and Gerlach, W.L. Gene 82, 45 (1989).

Simple RNA enzymes with new and highly specific endoribonuclease activities.
Haseloff, J. and Gerlach, W.L. Nature 334, 585 (1988).

The Phantom designs an RNA Enzyme.
Haseloff, J. and Gerlach, W.L. Poster, Lorne Genome Conference (1988).

Construction of a plant disease resistance gene from the satellite RNA of tobacco ringspot virus.
Gerlach, W.L., Llewellen, D. and Haseloff, J. Nature 328, 802 (1987).

On the mechanism of replication of viroids, virusoids and satellite RNAs.
Symons, R.H., Haseloff, J., Visvader, J.E., Keese, P., Murphy, P.J., Gill, D.S., Gordon, K.H.J. and Bruening, G. in Subviral pathogens of plants and animals, viroids and prions. Academic Press. (1985).

Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses.
Ahlquist, P., Strauss, E.G., Rice, C.M., Strauss, J.H., Haseloff, J.P. and Zimmern, D. J. Virology 53, 536 (1985).

2' Phosphomonoester, 3'-5' phosphodiester bond at a unique site in a circular viral RNA.
Kiberstis, P.A., Haseloff, J. and Zimmern, D. EMBO J. 4, 817 (1985).

Striking similarities in amino acid sequence among non-structural proteins encoded by RNA viruses that have dissimilar genomic organization.
Haseloff, J., Goelet, P., Zimmern, D., Alquist, P., Dasgupta, R. and Kaesberg, P. Proc. Natl. Acad. Sci. USA. 81, 4358, (1984).

Comparative structure and properties of virusoids.
Haseloff, J., Keese, P.K. and Symons, R.H. in Plant Infectious Agents: viruses, viroids, virusoids and satellites, Robertson, H.D., Howell, S.H., Zaitlin, M. and Malmberg, R. Eds., Cold Spring Harbor (1983).

Viroid RNAs of cadang-cadang disease of coconuts.
Haseloff, J., Mohamed, N.A. and Symons, R.H. Nature 299, 316 (1982).

Characterization of the different electrophoretic forms of the cadang-cadang viroid.
Mohamed, N.A., Haseloff, J. and Symons, R.H. J. Gen. Virol. 63, 181 (1982).

Comparative sequence and structure of viroid-like RNAs of two plant viruses.
Haseloff, J. and Symons, R.H. Nuc. Acids Res. 10, 3681 (1982).

Chrysanthemum stunt viroid: primary sequence and secondary structure.
Haseloff, J. and Symons, R.H. Nuc. Acids Res. 9, 2741 (1981).